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1

Conformational Exchange in Pseudoazurin: Different Kinds of Microsecond to Millisecond Dynamics Characterized by Their pH and Buffer Dependence Using 15 N NMR Relaxation †

Hass, Mathias A. S., Vlasie, Monica D., Ubbink, Marcellus, Led, Jens J.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.15 MB

english, 2009

2

An Ensemble of Rapidly Interconverting Orientations in Electrostatic Protein-Peptide Complexes Characterized by NMR Spectroscopy

Guan, Jia-Ying, Foerster, Johannes M., Drijfhout, Jan W., Timmer, Monika, Blok, Anneloes, Ullmann, G. Matthias, Ubbink, Marcellus

Journal:

Year:

2014

Language:

english

File:

PDF, 3.33 MB

english, 2014

3

Effect of the Protein Matrix of Cytochrome c in Suppressing the Inherent Peroxidase Activity of Its Heme Prosthetic Group

Rutger E. M. Diederix, Marcellus Ubbink, Gerard W. Canters

Journal:

Year:

2002

Language:

english

File:

PDF, 76 KB

english, 2002

4

The Ternary Complex of Cytochrome f and Cytochrome c: Identification of a Second Binding Site and Competition for Plastocyanin Binding

Peter B. Crowley, Kersten S. Rabe, Jonathan A. R. Worrall, Gerard W. Canters, Marcellus Ubbink

Journal:

Year:

2002

Language:

english

File:

PDF, 237 KB

english, 2002

5

Effects of Dimerization on Protein Electron Transfer

Irene M. C. van Amsterdam, Marcellus Ubbink, Lars J. C. Jeuken, Martin Ph. Verbeet, Oliver Einsle, Albrecht Messerschmidt, Gerard W. Canters

Journal:

Chemistry - A European Journal

Year:

2001

Language:

english

File:

PDF, 178 KB

english, 2001

6

Messung eines Cu-Cu-Abstands von 26 Å mit einer gepulsten EPR-Methode

Irene M. C. van Amsterdam, Marcellus Ubbink, Gerard W. Canters, Martina Huber

Journal:

Angewandte Chemie

Year:

2003

File:

PDF, 134 KB

2003

7

Measurement of a CuCu Distance of 26 Å by a Pulsed EPR Method

Irene M. C. van Amsterdam, Marcellus Ubbink, Gerard W. Canters, Martina Huber

Journal:

Angewandte Chemie International Edition

Year:

2003

Language:

english

File:

PDF, 186 KB

english, 2003

8

The Effects of Ligand Exchange and Mobility on the Peroxidase Activity of a Bacterial Cytochrome c upon Unfolding

Jonathan A. R. Worrall, Rutger E. M. Diederix, Miguel Prudêncio, Christian E. Lowe, Simone Ciofi-Baffoni, Marcellus Ubbink, Gerard W. Canters

Journal:

Year:

2005

Language:

english

File:

PDF, 289 KB

english, 2005

9

Pseudoazurin–Nitrite Reductase Interactions

Antonietta Impagliazzo, Ludwig Krippahl, Marcellus Ubbink

Journal:

Year:

2005

Language:

english

File:

PDF, 249 KB

english, 2005

10

Engineering an Allosteric Binding Site for Aminoglycosides into TEM1-β-Lactamase

Dr. Alexander N. Volkov, Dr. Humberto Barrios, Dr. Pascale Mathonet, Dr. Christine Evrard, Prof. Marcellus Ubbink, Prof. Jean-Paul Declercq, Prof. Patrice Soumillion, Prof. Jacques Fastrez

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

11

A Caged Lanthanide Complex as a Paramagnetic Shift Agent for Protein NMR

Miguel Prudêncio, Jan Rohovec, Joop A. Peters, Elitza Tocheva, Martin J. Boulanger, Michael E. P. Murphy, Hermen-Jan Hupkes, Walter Kosters, Antonietta Impagliazzo, Marcellus Ubbink

Journal:

Chemistry - A European Journal

Year:

2004

Language:

english

File:

PDF, 273 KB

english, 2004

12

Long-Range-Distance NMR Effects in a Protein Labeled with a Lanthanide–DOTA Chelate

Monica D. Vlasie, Clara Comuzzi, Adrianus M. C. H. van den Nieuwendijk, Miguel Prudêncio, Mark Overhand, Marcellus Ubbink

Journal:

Chemistry - A European Journal

Year:

2007

Language:

english

File:

PDF, 416 KB

english, 2007

13

Close Encounters of the Transient Kind: Protein Interactions in the Photosynthetic Redox Chain Investigated by NMR Spectroscopy

Peter B. Crowley, Marcellus Ubbink

Journal:

Year:

2004

File:

PDF, 53 KB

2004

14

Click Chemistry with an Active Site Variant of Azurin

Thyra E. de Jongh, Anne-Marie M. van Roon, Miguel Prudêncio, Marcellus Ubbink, Gerard W. Canters

Journal:

European Journal of Inorganic Chemistry

Year:

2006

Language:

english

File:

PDF, 267 KB

english, 2006

15

Inter- and Intramolecular Electron Transfer in Modified Azurin Dimers

Thyra E. de Jongh, Maren Hoffmann, Oliver Einsle, Davide Cavazzini, Gian-Luigi Rossi, Marcellus Ubbink, Gerard W. Canters

Journal:

European Journal of Inorganic Chemistry

Year:

2007

Language:

english

File:

PDF, 232 KB

english, 2007

16

Transient complexes of redox proteins: structural and dynamic details from NMR studies

Miguel Prudêncio, Marcellus Ubbink

Journal:

Journal of Molecular Recognition

Year:

2004

Language:

english

File:

PDF, 447 KB

english, 2004

17

Accurate long-range distance measurements in a doubly spin-labeled protein by a four-pulse, double electron–electron resonance method

Michela G. Finiguerra, Miguel Prudêncio, Marcellus Ubbink, Martina Huber

Journal:

Magnetic Resonance in Chemistry

Year:

2008

Language:

english

File:

PDF, 184 KB

english, 2008

18

High-field (275 GHz) spin-label EPR for high-resolution polarity determination in proteins

Michelina G. Finiguerra, Hubert Blok, Marcellus Ubbink, Martina Huber

Journal:

Journal of Magnetic Resonance

Year:

2006

Language:

english

File:

PDF, 169 KB

english, 2006

19

A pulsed EPR method to determine distances between paramagnetic centers with strong spectral anisotropy and radicals: The dead-time free RIDME sequence

Sergey Milikisyants, Francesco Scarpelli, Michelina G. Finiguerra, Marcellus Ubbink, Martina Huber

Journal:

Journal of Magnetic Resonance

Year:

2009

Language:

english

File:

PDF, 554 KB

english, 2009

20

Paramagnetic tagging for protein structure and dynamics analysis

Peter H.J. Keizers, Marcellus Ubbink

Journal:

Progress in Nuclear Magnetic Resonance Spectroscopy

Year:

2011

Language:

english

File:

PDF, 783 KB

english, 2011

21

Anti-cooperativity in the two electron oxidation of the S118C disulfide dimer of azurin

Irene M.C. van Amsterdam, Marcellus Ubbink, Gerard W. Canters

Journal:

Inorganica Chimica Acta

Year:

2002

Language:

english

File:

PDF, 146 KB

english, 2002

22

Modelling protein-protein electron transfer in cross-linked dimers of azurin

Thyra E. de Jongh, Miguel Prudencio, Marcellus Ubbink, Gerard W. Canters

Journal:

Journal of Inorganic Biochemistry

Year:

2003

Language:

english

File:

PDF, 167 KB

english, 2003

23

CLaNP-An artificial paramagnetic centre to study proteins by NMR

Miguel Prudencio, Antonietta Impagliazzo, Marcellus Ubbink, Jan Rohovec, Joop Peters

Journal:

Journal of Inorganic Biochemistry

Year:

2003

Language:

english

File:

PDF, 133 KB

english, 2003

24

The peroxidase activity of cytochrome c-550 from Paracoccus versutus

Rutger E. M. Diederix, Marcellus Ubbink, Gerard W. Canters

Journal:

Year:

2001

Language:

english

File:

PDF, 703 KB

english, 2001

25

NMR assignments and relaxation studies of Thiobacillus versutus ferrocytochrome c-550 indicate the presence of a highly mobile 13-residues long C-terminal tail

Marcellus Ubbink, Mark Pfuhl, John Van Der Oost, Axel Berg, Gerard W. Canters

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 2.63 MB

english, 1996

26

Modulation of protein–ligand interactions by photocleavage of a cyclic peptide using phosphatidylinositol 3-kinase SH3 domain as model system

Isao Takahashi, Shigeki Kuroiwa, Hanna E. Lindfors, Lionel A. Ndamba, Yoshitaka Hiruma, Tatsuo Yajima, Nobuyuki Okishio, Marcellus Ubbink, Shun Hirota

Journal:

Journal of Peptide Science

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009

27

Amicyanin metal-site structure and interaction with MADH: PAC and NMR spectroscopy of Ag-, Cd-, and Cu-amicyanin

Lars Elkjaer Jørgensen, Marcellus Ubbink, Eva Danielsen

Journal:

JBIC Journal of Biological Inorganic Chemistry

Year:

2004

Language:

english

File:

PDF, 505 KB

english, 2004

28

pH dependence of the enantioselective excited-state quenching of Λ,Δ-Tb(III) and Λ,Δ-Eu(III)tris(pyridine-2,6-dicarboxylate) chelates by ferricytochromecfrom horse heart and ferricytochromec-550 fromParacoccus versutus

S. C. J. Meskers, Marcellus Ubbink, Gerard W. Canters, Harry P. J. M. Dekkers

Journal:

JBIC Journal of Biological Inorganic Chemistry

Year:

1998

Language:

english

File:

PDF, 295 KB

english, 1998

29

Solution Structure of the Second PDZ Domain of the Neuronal Adaptor X11α and its Interaction with the C-terminal Peptide of the Human Copper Chaperone for Superoxide Dismutase

Aude E. Duquesne, Martina de Ruijter, Jaap Brouwer, Jan W. Drijfhout, Sander B. Nabuurs, Chris A. E. M. Spronk, Geerten W. Vuister, Marcellus Ubbink, Gerard W. Canters

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 425 KB

english, 2005

30

Mobility of TOAC spin-labelled peptides binding to the Src SH3 domain studied by paramagnetic NMR

Hanna E. Lindfors, Peter E. de Koning, Jan Wouter Drijfhout, Brigida Venezia, Marcellus Ubbink

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 597 KB

english, 2008

31

Intermolecular dynamics studied by paramagnetic tagging

Xingfu Xu, Peter H. J. Keizers, Wolfgang Reinle, Frank Hannemann, Rita Bernhardt, Marcellus Ubbink

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 356 KB

english, 2009

32

Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy

Alexander N. Volkov, Marcellus Ubbink, Nico A. J. van Nuland

Journal:

Journal of Biomolecular NMR

Year:

2010

Language:

english

File:

PDF, 989 KB

english, 2010

33

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

Soumyasri Dasgupta, Xiaoyu Hu, Peter H. J. Keizers, Wei-Min Liu, Claudio Luchinat, Malini Nagulapalli, Mark Overhand, Giacomo Parigi, Luca Sgheri, Marcellus Ubbink

Journal:

Journal of Biomolecular NMR

Year:

2011

Language:

english

File:

PDF, 1.96 MB

english, 2011

34

Anisotropic spin label mobilities in azurin from 95 GHz electron paramagnetic resonance spectroscopy

Michelina G Finiguerra, Irene M.C van Amsterdam, Sharmini Alagaratnam, Marcellus Ubbink, Martina Huber

Journal:

Chemical Physics Letters

Year:

2003

Language:

english

File:

PDF, 220 KB

english, 2003

35

Functional characterization of the evolutionarily divergent fern plastocyanin

José A. Navarro, Christian E. Lowe, Reinout Amons, Takamitsu Kohzuma, Gerard W. Canters, Miguel A. De la Rosa, Marcellus Ubbink, Manuel Hervás

Journal:

Year:

2004

Language:

english

File:

PDF, 398 KB

english, 2004

36

The effect of replacing the axial methionine ligand with a lysine residue in cytochrome c-550 from Paracoccus versutus assessed by X-ray crystallography and unfolding

Jonathan A. R. Worrall, Anne-Marie M. van Roon, Marcellus Ubbink, Gerard W. Canters

Journal:

Year:

2005

Language:

english

File:

PDF, 582 KB

english, 2005

37

Dynamics in electron transfer protein complexes

Qamar Bashir, Sandra Scanu, Marcellus Ubbink

Journal:

Year:

2011

Language:

english

File:

PDF, 316 KB

english, 2011

38

Probing the reactivity of different forms of azurin by flavin photoreduction

Sharmini Alagaratnam, Nico J. Meeuwenoord, José A. Navarro, Manuel Hervás, Miguel A. De la Rosa, Maren Hoffmann, Oliver Einsle, Marcellus Ubbink, Gerard W. Canters

Journal:

Year:

2011

Language:

english

File:

PDF, 431 KB

english, 2011

39

Dramatic modulation of electron transfer in protein complexes by crosslinking

van Amsterdam, Irene M. C., Ubbink, Marcellus, Einsle, Oliver, Messerschmidt, Albrecht, Merli, Angelo, Cavazzini, Davide, Rossi, Gian Luigi, Canters, Gerard W.

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 2.22 MB

english, 2001

40

Letter to the Editor:1H,13C and15N resonance assignment of Cu(I)-pseudoazurin fromAlcaligenes faecalis S-6

Antonietta Impagliazzo, Marcellus Ubbink

Journal:

Journal of Biomolecular NMR

Year:

2004

Language:

english

File:

PDF, 64 KB

english, 2004

41

Complexes of Photosynthetic Redox Proteins Studied by NMR

Marcellus Ubbink

Journal:

Photosynthesis Research

Year:

2004

Language:

english

File:

PDF, 397 KB

english, 2004

42

Surface interactions in the complex between cytochrome f and the E43Q/D44N and E59K/E60Q plastocyanin double mutants as determined by 1H-NMR chemical shift analysis

Anders Bergkvist, Mikael Ejdebäck, Marcellus Ubbink, B. Göran Karlsson

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 99 KB

english, 2001

43

The Complex of Cytochrome f and Plastocyanin from Nostoc sp. PCC 7119 is Highly Dynamic

Sandra Scanu, Johannes Förster, Dr. Michela G. Finiguerra, Maryam Hashemi Shabestari, Dr. Martina Huber, Prof. Dr. Marcellus Ubbink

Journal:

Year:

2012

Language:

english

File:

PDF, 3.26 MB

english, 2012

44

The Src SH2 domain interacts dynamically with the focal adhesion kinase binding site as demonstrated by paramagnetic nmr spectroscopy

Hanna E. Lindfors, Jan Wouter Drijfhout, Marcellus Ubbink

Journal:

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

45

The courtship of proteins: Understanding the encounter complex

Marcellus Ubbink

Journal:

Year:

2009

Language:

english

File:

PDF, 567 KB

english, 2009

46

Structural basis for a PABPN1 aggregation-preventing antibody fragment in OPMD

Antonietta Impagliazzo, Armand W. Tepper, Theo C. Verrips, Marcellus Ubbink, Silvère M. van der Maarel

Journal:

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

47

Linker length dependent binding of a focal adhesion kinase derived peptide to the Src SH3–SH2 domains

Hanna E. Lindfors, Bharat Somireddy Venkata, Jan W. Drijfhout, Marcellus Ubbink

Journal:

Year:

2011

Language:

english

File:

PDF, 821 KB

english, 2011

48

Increase of the peroxidase activity of cytochrome c-550 by the interaction with detergents

Rutger E.M. Diederix, Stephane Busson, Marcellus Ubbink, Gerard W. Canters

Journal:

Journal of Molecular Catalysis B: Enzymatic

Year:

2004

Language:

english

File:

PDF, 128 KB

english, 2004

49

David G. Reid,Editors, , NMR in detail Protein NMR Techniques (1997) Humana Press,New York, USA 0 89603 309 0 x + 419.

Marcellus Ubbink

Journal:

Trends in Biotechnology

Year:

1998

Language:

english

File:

PDF, 114 KB

english, 1998

50

The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics

Marcellus Ubbink, Mikael Ejdebäck, B Göran Karlsson, Derek S Bendall

Journal:

Year:

1998

Language:

english

File:

PDF, 1.00 MB

english, 1998